[1] "A core transcriptional network for early mesoderm development in Drosophila melanogaster", Genes Development 21: 436-449

2006

[2] "The Transcriptome of the Sea Urchin Embryo", Science 314: 960 - 962

[3] "The genome of the sea urchin Strongylocentrotus purpuratus", Science 314: 941-952

[4] "Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway", Proc. Natl. Acad. Sci. U S A. 103:4192-4197

[5] "Genome-wide transcription analyses in rice using tiling microarrays", Nature Genetics 38:124-129 [Epub ahead of print]

2005

[6] "A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarray", Plant Molecular Biology 59:137-149

[7] "Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping", TRENDS in Genetics 21:466-75. Review. reference

[8] "Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture.", Genome Biology 6:6:R52

[9] "Identification of Novel Transcribed Sequences in Arabidopsis thaliana using High-Resolution Genome Tiling Arrays.", Proc. Natl. Acad. Sci. U S A. 102:4453-4458

[10] "Genome-wide transcriptional analysis of flagellar regeneration in Chlamydomonas reinhardtii identifies orthologs of ciliary disease genes.", Proc. Natl. Acad. Sci. U S A. 102:3703-3707 [Epub ahead of print]

[11] "Hybrid MD-Nernst Planck Model Of Alpha Hemolysin Conductance Properties", Molecular Simulations , vol.31, No.2-3, 15 February-15 March 2005, 79-93

2004

[12] "Global Identification of Human Transcribed Sequences with Genome Tiling Arrays.", Science 306: 655-660

[13] "A Gene Expression Map for the Euchromatic Genome of Drosophila melanogaster.", Science 306: 655-660

[14] "The ENCODE (ENCyclopedia Of DNA Elements) Project", Science 22 October 2004: 636-640

[15] "Characterization of synthetic DNA barcodes in Saccharomyces cerevisiae gene-deletion strains.", Proc. Natl. Acad. Sci. U S A. 101:11046-11051

[16] "Hybrid MD-PNP Simulations Of The α-hemolysin Open Channel Ionic Current", Proceedings of the Nanotechnology Conference NSTI Nanotech  , vol1, pp. 148

2003

[17] "Towards An MD Simulation Of Ion Currents In The Alpha Hemolysin Channel", Proceedings of the IEEE-Nano 2003, Third IEEE Conference on Nanotechnology   , San Francisco, CA, 12-14 August 2003.

[18] "Polymer Translocation Through a Nanopore: A Geometry Dependence Study", Proceedings of the IEEE-Nano 2003, Third IEEE Conference on Nanotechnology , San Francisco, CA, 12-14 August 2003.

[19] "Functional profiling of a human cytomegalovirus genome",Proc. Natl. Acad. Sci. U S A. 2003 Nov 25